If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ), 'gf_id' => 'HOM05D000802', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000802' ), 'data_identifier' => 'HOM05D000802', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000802', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '737', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21700' => 'bna', 'A02p24780' => 'bna', 'A03p02040' => 'bna', 'A03p07440' => 'bna', 'A05p32920' => 'bna', 'A05p32930' => 'bna', 'A09p01960' => 'bna', 'A10p01040' => 'bna', 'A10p19640' => 'bna', 'Aa31LG10G6290' => 'aar', 'Aa31LG11G5680' => 'aar', 'Aa31LG1G10220' => 'aar', 'Aa31LG1G14270' => 'aar', 'Aa31LG2G15650' => 'aar', 'Aa31LG5G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4401' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2368' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4304' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.630' => 'aag', 'Actinidia00604' => 'ach', 'Actinidia01474' => 'ach', 'Actinidia01475' => 'ach', 'Actinidia15938' => 'ach', 'Actinidia15941' => 'ach', 'Actinidia20494' => 'ach', 'Actinidia23683' => 'ach', 'Actinidia23685' => 'ach', 'Actinidia24338' => 'ach', 'Actinidia26810' => 'ach', 'Actinidia31238' => 'ach', 'Actinidia32229' => 'ach', 'Actinidia37012' => 'ach', 'Actinidia37013' => 'ach', 'Ah.01g022730' => 'amhyb', 'Ah.09g224380' => 'amhyb', 'Ah.15g093320' => 'amhyb', 'AL1G11610' => 'aly', 'AL3G10170' => 'aly', 'AL3G10180' => 'aly', 'AL3G10190' => 'aly', 'AL3G29540' => 'aly', 'AL3G49320' => 'aly', 'AL4G45810' => 'aly', 'AL5G12520' => 'aly', 'AL6G14710' => 'aly', 'AL6G31850' => 'aly', 'AL6G50530' => 'aly', 'AL6G50570' => 'aly', 'AL7G36460' => 'aly', 'AL7G39480' => 'aly', 'Aqoxy1G02107' => 'aox', 'Aqoxy1G02108' => 'aox', 'Aqoxy241s003' => 'aox', 'Aqoxy241s004' => 'aox', 'Aqoxy2G02979' => 'aox', 'Aqoxy3G03249' => 'aox', 'Aqoxy5G04384' => 'aox', 'Aqoxy6G02209' => 'aox', 'Aqoxy6G02417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.34KTSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A528V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C252F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HJC2UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HMK4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1F3AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4HZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2PGQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7M19X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RR6KZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG9L4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI4P0K' => 'arhy', 'AT1G02280' => 'ath', 'AT2G16640' => 'ath', 'AT3G16620' => 'ath', 'AT4G02482' => 'ath', 'AT4G02510' => 'ath', 'AT4G15810' => 'ath', 'AT5G05000' => 'ath', 'AT5G20300' => 'ath', 'ATR0705G100' => 'atr', 'ATR0789G092' => 'atr', 'ATR0796G049' => 'atr', 'ATR0810G228' => 'atr', 'ATR1132G096' => 'atr', 'Atru.chr4.2841' => 'acertr', 'Atru.chr4.2842' => 'acertr', 'Atru.chr4.2843' => 'acertr', 'Atru.chr4.2844' => 'acertr', 'Atru.chr4.2845' => 'acertr', 'Atru.chr5.1174' => 'acertr', 'Atru.chr5.3242' => 'acertr', 'Atru.chr5.3268' => 'acertr', 'Atru.chr5.812' => 'acertr', 'Atru.chr6.3520' => 'acertr', 'Atru.chr7.1969' => 'acertr', 'Atru.chr7.1976' => 'acertr', 'AUR62008663' => 'cqu', 'AUR62010075' => 'cqu', 'AUR62010114' => 'cqu', 'AUR62011201' => 'cqu', 'AUR62013067' => 'cqu', 'AUR62013109' => 'cqu', 'AUR62013286' => 'cqu', 'AUR62033106' => 'cqu', 'BcaB01g02034' => 'bca', 'BcaB01g05021' => 'bca', 'BcaB01g05298' => 'bca', 'BcaB03g15023' => 'bca', 'BcaB06g25762' => 'bca', 'BcaB07g33833' => 'bca', 'BcaC03g15289' => 'bca', 'BcaC03g16135' => 'bca', 'BcaC04g19422' => 'bca', 'BcaC05g24608' => 'bca', 'BcaC05g28860' => 'bca', 'BcaC06g32215' => 'bca', 'BcaC07g42328' => 'bca', 'BcaC07g42381' => 'bca', 'BcaC09g50273' => 'bca', 'BcaC09g50277' => 'bca', 'BcaC09g50278' => 'bca', 'BcaC09g50279' => 'bca', 'BcaNung00244' => 'bca', 'BcaNung04062' => 'bca', 'BolC1t02653H' => 'bol', 'BolC2t08944H' => 'bol', 'BolC2t09949H' => 'bol', 'BolC3t12791H' => 'bol', 'BolC3t13252H' => 'bol', 'BolC3t13364H' => 'bol', 'BolC5t28888H' => 'bol', 'BolC5t33721H' => 'bol', 'BolC5t33722H' => 'bol', 'BolC8t52853H' => 'bol', 'BolC9t53135H' => 'bol', 'BolC9t58457H' => 'bol', 'BraA01t02079Z' => 'bra', 'BraA02t07467Z' => 'bra', 'BraA03t09573Z' => 'bra', 'BraA03t10073Z' => 'bra', 'BraA05t22117Z' => 'bra', 'BraA05t22118Z' => 'bra', 'BraA09t35846Z' => 'bra', 'BraA09t42222Z' => 'bra', 'BraA10t42382Z' => 'bra', 'BraA10t44039Z' => 'bra', 'C01p27050' => 'bna', 'C02p28950' => 'bna', 'C02p39390' => 'bna', 'C03p02390' => 'bna', 'C03p07510' => 'bna', 'C03p08470' => 'bna', 'C03p08610' => 'bna', 'C03p08620' => 'bna', 'C05p01070' => 'bna', 'C05p49650' => 'bna', 'C09p02050' => 'bna', 'C09p55890' => 'bna', 'CAN.G1151.5' => 'can', 'CAN.G1382.6' => 'can', 'CAN.G185.30' => 'can', 'CAN.G339.28' => 'can', 'CAN.G588.39' => 'can', 'CAN.G598.14' => 'can', 'CANSAT01G1655' => 'cansat', 'CANSAT11G1430' => 'cansat', 'CANSAT21G2453' => 'cansat', 'CANSAT78G2010' => 'cansat', 'CARHR001580' => 'chi', 'CARHR091040' => 'chi', 'CARHR091050' => 'chi', 'CARHR091860' => 'chi', 'CARHR106860' => 'chi', 'CARHR192530' => 'chi', 'CARHR208260' => 'chi', 'CARHR250780' => 'chi', 'CARHR250810' => 'chi', 'CARHR290330' => 'chi', 'Carub.0001s0131' => 'cru', 'Carub.0003s1635' => 'cru', 'Carub.0003s3039' => 'cru', 'Carub.0006s0394' => 'cru', 'Carub.0006s1869' => 'cru', 'Carub.0006s3462' => 'cru', 'Carub.0006s3465' => 'cru', 'Carub.0007s2584' => 'cru', 'Ca_01860_v3' => 'car', 'Ca_03912_v3' => 'car', 'Ca_08332_v3' => 'car', 'Ca_08333_v3' => 'car', 'Ca_15308_v3' => 'car', 'Ca_17851_v3' => 'car', 'Ca_21492_v3' => 'car', 'Ca_21655_v3' => 'car', 'Ca_30774_v3' => 'car', 'CBR_g24117' => 'cbr', 'CBR_g33930' => 'cbr', 'CBR_g51479' => 'cbr', 'CBR_g54201' => 'cbr', 'CBR_g64163' => 'cbr', 'Cc02_g04970' => 'ccan', 'Cc02_g16410' => 'ccan', 'Cc03_g01880' => 'ccan', 'Cc06_g07830' => 'ccan', 'Cc07_g17650' => 'ccan', 'CDE02G2594' => 'cde', 'CDE05G2499' => 'cde', 'CDE05G3593' => 'cde', 'CDE08G0833' => 'cde', 'CDE11G0099' => 'cde', 'CDE11G0943' => 'cde', 'Cfa002292' => 'cfa', 'Cfa005211' => 'cfa', 'Cfa005941' => 'cfa', 'Ciclev10004171m.g' => 'ccl', 'Ciclev10007507m.g' => 'ccl', 'Ciclev10011979m.g' => 'ccl', 'Ciclev10018516m.g' => 'ccl', 'Ciclev10021391m.g' => 'ccl', 'Ciclev10030161m.g' => 'ccl', 'CiPaw.01G148400' => 'cil', 'CiPaw.03G250200' => 'cil', 'CiPaw.05G078900' => 'cil', 'CiPaw.06G124200' => 'cil', 'CiPaw.08G097200' => 'cil', 'CiPaw.09G002500' => 'cil', 'CiPaw.10G001500' => 'cil', 'ClCG02G004240' => 'cla', 'ClCG10G000730' => 'cla', 'ClCG10G010810' => 'cla', 'ClCG11G003380' => 'cla', 'COL.COLO4_13867' => 'col', 'COL.COLO4_15556' => 'col', 'COL.COLO4_17293' => 'col', 'COL.COLO4_23080' => 'col', 'COL.COLO4_33450' => 'col', 'Cpa.g.sc33.189' => 'cpa', 'Cpa.g.sc37.176' => 'cpa', 'Cpa.g.sc46.61' => 'cpa', 'Cpa.g.sc57.63' => 'cpa', 'Cpa.g.sc9.215' => 'cpa', 'Cre06.g252200' => 'cre', 'Cre17.g707500' => 'cre', 'Cre17.g734300' => 'cre', 'CsaV3_2G003230' => 'csa', 'CsaV3_3G000780' => 'csa', 'CsaV3_4G000680' => 'csa', 'CsaV3_7G000870' => 'csa', 'CSS0010650' => 'camsi', 'CSS0022063' => 'camsi', 'CSS0023524' => 'camsi', 'CSS0025255' => 'camsi', 'CSS0031314' => 'camsi', 'CSS0045055' => 'camsi', 'CSS0050495' => 'camsi', 'DCAR_002815' => 'dca', 'DCAR_002820' => 'dca', 'DCAR_003191' => 'dca', 'DCAR_005803' => 'dca', 'DCAR_009465' => 'dca', 'DCAR_017773' => 'dca', 'DCAR_022775' => 'dca', 'DCAR_027074' => 'dca', 'Dinv04953' => 'din', 'Dinv12706' => 'din', 'Dinv19710' => 'din', 'Dinv19711' => 'din', 'Dinv21876' => 'din', 'Dinv21877' => 'din', 'Dinv33034' => 'din', 'Dinv33037' => 'din', 'Dinv33039' => 'din', 'Dinv34517' => 'din', 'Dinv36463' => 'din', 'Dinv41458' => 'din', 'Dinv41963' => 'din', 'Dinv41964' => 'din', 'Dinv41967' => 'din', 'Dinv44379' => 'din', 'Duzib052G0465' => 'dzi', 'Duzib128G0569' => 'dzi', 'Duzib132G0263' => 'dzi', 'Duzib133G1225' => 'dzi', 'Duzib138G1614' => 'dzi', 'Duzib151G1005' => 'dzi', 'Duzib168G1852' => 'dzi', 'Duzib248G0272' => 'dzi', 'ECA233G4092' => 'eca', 'ECA236G1679' => 'eca', 'ECA240G3906' => 'eca', 'ECA246G2683' => 'eca', 'ECA247G2723' => 'eca', 'ECA248G3469' => 'eca', 'EL10Ac7g17464' => 'bvu', 'EL10Ac8g18757' => 'bvu', 'EL10Ac9g21416' => 'bvu', 'EL10Ac9g21462' => 'bvu', 'EL10Ac9g21747' => 'bvu', 'Eucgr.A02951' => 'egr', 'Eucgr.B01320' => 'egr', 'Eucgr.C00581' => 'egr', 'Eucgr.G01765' => 'egr', 'Eucgr.H01158' => 'egr', 'Eucgr.K00109' => 'egr', 'FAN02G0388' => 'fan', 'FAN05G2667' => 'fan', 'FAN09G2531' => 'fan', 'FAN14G1564' => 'fan', 'FAN15G0734' => 'fan', 'FAN15G2233' => 'fan', 'FAN15G2246' => 'fan', 'FAN19G2084' => 'fan', 'FAN20G1251' => 'fan', 'FAN20G1707' => 'fan', 'FAN23G3141' => 'fan', 'FAN24G2763' => 'fan', 'FAN24G2817' => 'fan', 'FAN26G3438' => 'fan', 'FAN27G0117' => 'fan', 'FAN27G2117' => 'fan', 'FAN28G0142' => 'fan', 'FvH4_1g02420' => 'fve', 'FvH4_2g01650' => 'fve', 'FvH4_2g25480' => 'fve', 'FvH4_6g30520' => 'fve', 'Glyma.03G003600' => 'gma', 'Glyma.05G166300' => 'gma', 'Glyma.08G124300' => 'gma', 'Glyma.11G105500' => 'gma', 'Glyma.12G030400' => 'gma', 'Glyma.13G162200' => 'gma', 'Glyma.14G112351' => 'gma', 'Glyma.17G026700' => 'gma', 'Glyma.17G109200' => 'gma', 'Glyma.19G122600' => 'gma', 'Gohir.A03G203700' => 'ghi', 'Gohir.A06G052700' => 'ghi', 'Gohir.A08G122600' => 'ghi', 'Gohir.A09G238900' => 'ghi', 'Gohir.A10G164300' => 'ghi', 'Gohir.A11G102800' => 'ghi', 'Gohir.A12G038300' => 'ghi', 'Gohir.A12G038600' => 'ghi', 'Gohir.A13G009800' => 'ghi', 'Gohir.A13G009900' => 'ghi', 'Gohir.D06G051700' => 'ghi', 'Gohir.D08G143800' => 'ghi', 'Gohir.D09G239800' => 'ghi', 'Gohir.D10G170550' => 'ghi', 'Gohir.D11G107300' => 'ghi', 'Gohir.D12G033700' => 'ghi', 'Gohir.D12G034000' => 'ghi', 'Gohir.D13G010700' => 'ghi', 'Gohir.D13G010800' => 'ghi', 'Gorai.004G148400' => 'gra', 'Gorai.006G262600' => 'gra', 'Gorai.007G114900' => 'gra', 'Gorai.007G242200' => 'gra', 'Gorai.008G034600' => 'gra', 'Gorai.008G035000' => 'gra', 'Gorai.010G060000' => 'gra', 'Gorai.011G190500' => 'gra', 'Gorai.013G011500' => 'gra', 'Gorai.013G011600' => 'gra', 'Gorai.N022100' => 'gra', 'GSVIVG01011531001' => 'vvi', 'GSVIVG01012833001' => 'vvi', 'GSVIVG01017736001' => 'vvi', 'GSVIVG01024062001' => 'vvi', 'GSVIVG01024469001' => 'vvi', 'GSVIVG01027981001' => 'vvi', 'HanXRQChr05g0143561' => 'han', 'HanXRQChr05g0144211' => 'han', 'HanXRQChr07g0186861' => 'han', 'HanXRQChr08g0223301' => 'han', 'HanXRQChr10g0284601' => 'han', 'HanXRQChr11g0335971' => 'han', 'HanXRQChr11g0344251' => 'han', 'HanXRQChr13g0411241' => 'han', 'HanXRQChr15g0465731' => 'han', 'HanXRQChr15g0479031' => 'han', 'Haze_01198' => 'cav', 'Haze_02184' => 'cav', 'Haze_04905' => 'cav', 'Haze_19432' => 'cav', 'Haze_25479' => 'cav', 'Hma1.2p1_0032F.1_g019575' => 'hma', 'Hma1.2p1_0209F.1_g088545' => 'hma', 'Hma1.2p1_0264F.1_g105690' => 'hma', 'Hma1.2p1_0292F.1_g115850' => 'hma', 'Hma1.2p1_2670F.1_g326600' => 'hma', 'HPP92_002399' => 'vpl', 'HPP92_007960' => 'vpl', 'HPP92_013712' => 'vpl', 'HPP92_013713' => 'vpl', 'HPP92_020085' => 'vpl', 'HPP92_020086' => 'vpl', 'Hund00036' => 'sun', 'Hund00053' => 'sun', 'Hund09298' => 'sun', 'Hund18132' => 'sun', 'Lalb_Chr01g0001691' => 'lal', 'Lalb_Chr07g0177701' => 'lal', 'Lalb_Chr12g0198291' => 'lal', 'Lalb_Chr12g0204661' => 'lal', 'Lalb_Chr13g0295541' => 'lal', 'Lalb_Chr14g0363101' => 'lal', 'Lalb_Chr18g0057961' => 'lal', 'Lalb_Chr19g0139221' => 'lal', 'Lalb_Chr22g0358181' => 'lal', 'Lj1C28T3' => 'lonja', 'Lj1C971G5' => 'lonja', 'Lj1g0025966' => 'lja', 'Lj3g0027098' => 'lja', 'Lj4g0007473' => 'lja', 'Lj4g0019372' => 'lja', 'Lj4g0027590' => 'lja', 'Lj5C183G4' => 'lonja', 'Lj5g0012016' => 'lja', 'Lj6P676T41' => 'lonja', 'Lj9C702G2' => 'lonja', 'Lsat_1_v5_gn_1_69920' => 'lsa', 'Lsat_1_v5_gn_3_45921' => 'lsa', 'Lsat_1_v5_gn_5_56900' => 'lsa', 'Lsat_1_v5_gn_8_10781' => 'lsa', 'Lsat_1_v5_gn_8_61381' => 'lsa', 'Lsat_1_v5_gn_9_960' => 'lsa', 'Manes.01G217201' => 'mes', 'Manes.01G237500' => 'mes', 'Manes.03G195500' => 'mes', 'Manes.05G006000' => 'mes', 'Manes.06G045400' => 'mes', 'Manes.11G082600' => 'mes', 'Manes.14G117600' => 'mes', 'Manes.15G012200' => 'mes', 'Mapoly0056s0020' => 'mpo', 'Mapoly0063s0085' => 'mpo', 'MBI09_g39820_MAGBIO' => 'mbi', 'MBI14_g30732_MAGBIO' => 'mbi', 'MBI18_g13692_MAGBIO' => 'mbi', 'MBI18_g21818_MAGBIO' => 'mbi', 'MBI18_g21819_MAGBIO' => 'mbi', 'MBI19_g09933_MAGBIO' => 'mbi', 'MBI19_g12140_MAGBIO' => 'mbi', 'MCO11G479' => 'mco', 'MCO13G455' => 'mco', 'MD02G1020900' => 'mdo', 'MD03G1285700' => 'mdo', 'MD05G1117800' => 'mdo', 'MD09G1219200' => 'mdo', 'MD10G1120800' => 'mdo', 'MD11G1305100' => 'mdo', 'MD15G1164100' => 'mdo', 'MD16G1168600' => 'mdo', 'MD17G1202600' => 'mdo', 'Medtr2g030160' => 'mtr', 'Medtr2g030610' => 'mtr', 'Medtr2g030630' => 'mtr', 'Medtr2g093130' => 'mtr', 'Medtr3g090160' => 'mtr', 'Medtr4g115710' => 'mtr', 'Medtr4g119910' => 'mtr', 'Medtr7g088050' => 'mtr', 'Medtr8g088370' => 'mtr', 'MELO3C004471.2' => 'cme', 'MELO3C013370.2' => 'cme', 'MELO3C013766.2' => 'cme', 'MELO3C017968.2' => 'cme', 'Migut.D00199' => 'egut', 'Migut.F00555' => 'egut', 'Migut.F01219' => 'egut', 'Migut.G00158' => 'egut', 'Migut.G00160' => 'egut', 'Migut.K00412' => 'egut', 'Migut.N01301' => 'egut', 'MSTRG.151' => 'ama', 'MSTRG.18166' => 'ama', 'MSTRG.26340' => 'ama', 'MSTRG.3913' => 'ama', 'MSTRG.5441' => 'ama', 'MSTRG.8392' => 'ama', 'Nitab4.5_0000059g0430' => 'nta', 'Nitab4.5_0000191g0210' => 'nta', 'Nitab4.5_0000283g0010' => 'nta', 'Nitab4.5_0000375g0300' => 'nta', 'Nitab4.5_0000619g0120' => 'nta', 'Nitab4.5_0000704g0020' => 'nta', 'Nitab4.5_0000980g0010' => 'nta', 'Nitab4.5_0002236g0120' => 'nta', 'Nitab4.5_0002267g0020' => 'nta', 'Nitab4.5_0003901g0050' => 'nta', 'Nn1g01718' => 'nnu', 'Nn1g02787' => 'nnu', 'Nn3g21446' => 'nnu', 'Nn4g25835' => 'nnu', 'Nn7g37630' => 'nnu', 'Nn8g41054' => 'nnu', 'Oeu006672.1' => 'oeu', 'Oeu008097.3' => 'oeu', 'Oeu011445.1' => 'oeu', 'Oeu018581.1' => 'oeu', 'Oeu029703.1' => 'oeu', 'Oeu044171.1' => 'oeu', 'Oeu046691.1' => 'oeu', 'Oeu052745.1' => 'oeu', 'Oeu056964.1' => 'oeu', 'Oeu063297.1' => 'oeu', 'Os01g0356800' => 'osa', 'Os03g0240500' => 'osa', 'Os03g0835100' => 'osa', 'Os05g0151400' => 'osa', 'Os10g0548800' => 'osa', 'Os12g0197400' => 'osa', 'Peaxi162Scf00001g00511' => 'pax', 'Peaxi162Scf00073g02022' => 'pax', 'Peaxi162Scf00088g01010' => 'pax', 'Peaxi162Scf00167g01122' => 'pax', 'Peaxi162Scf00362g00094' => 'pax', 'Peaxi162Scf00698g00016' => 'pax', 'PGR031G2974' => 'pgr', 'PGR042G3620' => 'pgr', 'PGR119G0088' => 'pgr', 'PGR119G1201' => 'pgr', 'PGR142G3262' => 'pgr', 'PGSC0003DMG400001593' => 'stu', 'PGSC0003DMG400005258' => 'stu', 'PGSC0003DMG400006301' => 'stu', 'PGSC0003DMG400009579' => 'stu', 'PGSC0003DMG400011395' => 'stu', 'PGSC0003DMG400011646' => 'stu', 'PGSC0003DMG400030710' => 'stu', 'Phvul.001G101200' => 'pvu', 'Phvul.002G246700' => 'pvu', 'Phvul.003G105700' => 'pvu', 'Phvul.003G170900' => 'pvu', 'Phvul.011G033400' => 'pvu', 'Potri.002G183400' => 'ptr', 'Potri.004G171600' => 'ptr', 'Potri.006G063500' => 'ptr', 'Potri.008G224900' => 'ptr', 'Potri.008G225000' => 'ptr', 'Potri.009G131200' => 'ptr', 'Potri.009G131300' => 'ptr', 'Potri.010G014300' => 'ptr', 'Potri.014G109400' => 'ptr', 'Potri.018G123300' => 'ptr', 'Pp3c11_19540' => 'ppa', 'Pp3c11_19560' => 'ppa', 'Pp3c11_19567' => 'ppa', 'Pp3c26_13870' => 'ppa', 'Pp3c27_4730' => 'ppa', 'Pp3c5_2650' => 'ppa', 'Pp3c7_3420' => 'ppa', 'Pp3c7_3450' => 'ppa', 'PRCOL_00006875' => 'pco', 'PRCOL_00006876' => 'pco', 'Prupe.3G078000' => 'ppe', 'Prupe.7G250500' => 'ppe', 'Prupe.8G162300' => 'ppe', 'Prupe.8G258800' => 'ppe', 'Psat1g166440' => 'psa', 'Psat1g167680' => 'psa', 'Psat1g167720' => 'psa', 'Psat2g109560' => 'psa', 'Psat3g083600' => 'psa', 'Psat4g027480' => 'psa', 'Psat4g036320' => 'psa', 'Psat5g002920' => 'psa', 'Psat5g002960' => 'psa', 'Psat5g306400' => 'psa', 'Psat7g064640' => 'psa', 'PSO017G0233' => 'pso', 'PSO063G4774' => 'pso', 'PSO170G2507' => 'pso', 'PSO339G5605' => 'pso', 'PSO384G0117' => 'pso', 'PSO384G2767' => 'pso', 'PSO541G3536' => 'pso', 'PSO782G1492' => 'pso', 'QL02p090262' => 'qlo', 'QL06p008959' => 'qlo', 'QL07p018488' => 'qlo', 'QL11p048558' => 'qlo', 'QL11p049138' => 'qlo', 'QL12p027198' => 'qlo', 'RcHm_v2.0_Chr2g0087381' => 'rch', 'RcHm_v2.0_Chr2g0136921' => 'rch', 'RcHm_v2.0_Chr6g0244541' => 'rch', 'RcHm_v2.0_Chr6g0293691' => 'rch', 'Rhsim01G0059800' => 'rsi', 'Rhsim03G0155200' => 'rsi', 'Rhsim04G0222800' => 'rsi', 'Rhsim05G0062300' => 'rsi', 'Rhsim09G0187600' => 'rsi', 'Rhsim11G0190300' => 'rsi', 'Rhsim13G0012100' => 'rsi', 'Sabra02G0132200' => 'sbr', 'Sabra04G0114000' => 'sbr', 'Sabra06G0046200' => 'sbr', 'Sabra08G0153000' => 'sbr', 'Sabra09G0100600' => 'sbr', 'Sabra09G0100700' => 'sbr', 'Sabra09G0100800' => 'sbr', 'Sabra09G0101500' => 'sbr', 'Sabra09G0101600' => 'sbr', 'Sabra09G0101700' => 'sbr', 'Sabra09G0101800' => 'sbr', 'Sabra10G0009200' => 'sbr', 'Sabra14G0080700' => 'sbr', 'Sabra18G0105000' => 'sbr', 'SalBow1G0855' => 'sbo', 'SalBow1G8207' => 'sbo', 'SalBow2G1448' => 'sbo', 'SalBow3G2010' => 'sbo', 'SalBow3G3128' => 'sbo', 'Sc05g0004170' => 'sci', 'Sc08g0003370' => 'sci', 'Sc14g0000140' => 'sci', 'Sc18g0006610' => 'sci', 'Sed0011951' => 'sed', 'Sed0016381' => 'sed', 'Sed0018586' => 'sed', 'Sed0021390' => 'sed', 'Sed0023889' => 'sed', 'Sed0025192' => 'sed', 'Sed0028230' => 'sed', 'SEGI_01077' => 'sgi', 'SEGI_03318' => 'sgi', 'SEGI_06442' => 'sgi', 'SEGI_06882' => 'sgi', 'SEGI_19187' => 'sgi', 'SEGI_25550' => 'sgi', 'SEGI_34328' => 'sgi', 'SGA_v2.0_scaffold145G36018' => 'sas', 'SGA_v2.0_scaffold1G00377' => 'sas', 'SGA_v2.0_scaffold207G41897' => 'sas', 'SGA_v2.0_scaffold58G20411' => 'sas', 'SGA_v2.0_scaffold60G20865' => 'sas', 'SGA_v2.0_scaffold63G21798' => 'sas', 'SGA_v2.0_scaffold67G22632' => 'sas', 'SHI05719' => 'shi', 'SMO117G0210' => 'smo', 'SMO117G0224' => 'smo', 'SMO197G0055' => 'smo', 'Solyc01g080780.2' => 'sly', 'Solyc01g111240.4' => 'sly', 'Solyc03g095220.3' => 'sly', 'Solyc05g052160.4' => 'sly', 'Solyc07g007650.3' => 'sly', 'Solyc09g074940.3' => 'sly', 'Solyc11g043000.1' => 'sly', 'Solyc11g043010.1' => 'sly', 'Sopen01g030740' => 'spe', 'Sopen01g053310' => 'spe', 'Sopen03g025230' => 'spe', 'Sopen05g030690' => 'spe', 'Sopen07g003640' => 'spe', 'Sopen09g029760' => 'spe', 'Sopen11g019350' => 'spe', 'Sopen11g019360' => 'spe', 'Sopen11g019370' => 'spe', 'Sp3g30110' => 'spa', 'Sp6g02390' => 'spa', 'Sp6g02420' => 'spa', 'Sp6g24120' => 'spa', 'Sp6g37800' => 'spa', 'Sp7g14180' => 'spa', 'TAR362G0539' => 'tar', 'TAR375G1110' => 'tar', 'TAR376G0990' => 'tar', 'TAR628G0247' => 'tar', 'TAR628G1239' => 'tar', 'TAR633G2247' => 'tar', 'TAR633G2337' => 'tar', 'TAR636G1579' => 'tar', 'TAR636G2607' => 'tar', 'THA.LOC104801264' => 'tha', 'THA.LOC104804335' => 'tha', 'THA.LOC104807274' => 'tha', 'THA.LOC104811021' => 'tha', 'THA.LOC104816490' => 'tha', 'THA.LOC104820265' => 'tha', 'THA.LOC104821777' => 'tha', 'THA.LOC104825917' => 'tha', 'Thecc.01G329500' => 'tca', 'Thecc.02G064400' => 'tca', 'Thecc.04G285000' => 'tca', 'Thecc.09G135100' => 'tca', 'Thecc.10G114800' => 'tca', 'Thhalv10008332m.g' => 'esa', 'Thhalv10008935m.g' => 'esa', 'Thhalv10012730m.g' => 'esa', 'Thhalv10014156m.g' => 'esa', 'Thhalv10017808m.g' => 'esa', 'Thhalv10022323m.g' => 'esa', 'Thhalv10022525m.g' => 'esa', 'Thhalv10024270m.g' => 'esa', 'Thhalv10028361m.g' => 'esa', 'Thhalv10029135m.g' => 'esa', 'TPR.G1095' => 'tpr', 'TPR.G23670' => 'tpr', 'TPR.G27837' => 'tpr', 'TPR.G3197' => 'tpr', 'TPR.G38520' => 'tpr', 'TPR.G6736' => 'tpr', 'TPR.G7976' => 'tpr', 'TWI09G0527' => 'twi', 'TWI14G0499' => 'twi', 'TWI23G0371' => 'twi', 'TWI23G1116' => 'twi', 'TWI31G1249' => 'twi', 'TWI32G0843' => 'twi', 'unitig_0.g2710' => 'ugi', 'unitig_0.g2711' => 'ugi', 'unitig_0.g655' => 'ugi', 'unitig_37.g12396' => 'ugi', 'unitig_52.g17375' => 'ugi', 'vmacro02464' => 'vma', 'vmacro06867' => 'vma', 'vmacro07737' => 'vma', 'vmacro08156' => 'vma', 'vmacro09943' => 'vma', 'vmacro17370' => 'vma', 'VMungo0251G2805' => 'vmu', 'VMungo1127G0888' => 'vmu', 'VMungo1215G2529' => 'vmu', 'VMungo1215G2867' => 'vmu', 'VMungo1383G1718' => 'vmu', 'Zm00001eb010200' => 'zma', 'Zm00001eb022910' => 'zma', 'Zm00001eb063660' => 'zma', 'Zm00001eb211170' => 'zma', 'Zm00001eb264300' => 'zma', 'Zm00001eb267970' => 'zma', 'Zm00001eb354100' => 'zma', 'Zm00001eb391770' => 'zma', 'Zm00001eb399060' => 'zma' ) $gf_id = 'HOM05D000802' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000802' ) $data_identifier = 'HOM05D000802' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 3, 'aly' => (int) 14, 'aox' => (int) 9, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 8, 'car' => (int) 9, 'cbr' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 16, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 14, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399060' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1